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Item type:Publication, The evolutionary assembly of forest communities along environmental gradients: recent diversification or sorting of pre-adapted clades?(Cold Spring Harbor Laboratory, 2020-12-22)Summary Biogeographic events occurring in the deep past can contribute to the structure of modern ecological communities. However, little is known about how the emergence of environmental gradients shape the evolution of species that underlie community assembly. In this study, we address how the creation of novel environments lead to community assembly via two non-mutually exclusive processes: 1) the immigration and ecological sorting of pre-adapted clades (ISPC), and 2) recent adaptive diversification (RAD). We study these processes in the context of the elevational gradient created by the uplift of the Central Andes. We develop a novel approach and method based on the decomposition of species turnover into within- and among-clade components, where clades correspond to lineages that originated before mountain uplift. Effects of ISPC and RAD can be inferred from how components of turnover change with elevation. We test our approach using data from over 500 Andean forest plots. We found that species turnover between communities at different elevations is dominated by the replacement of clades that originated before the uplift of the Central Andes. Our results suggest that immigration and sorting of clades pre-adapted to montane habitats is the primary mechanism shaping communities across elevations.1 - Some of the metrics are blocked by yourconsent settings
Item type:Publication, Technical workflow development for integrating drone surveys and entomological sampling to characterise aquatic larval habitats of Anopheles funestus in agricultural landscapes in Côte d’Ivoire(Hindawi Limited, 2021-01-01)Land-use practices such as agriculture can impact mosquito vector breeding ecology, resulting in changes in disease transmission. The typical breeding habitats of Africa’s second most important malaria vector Anopheles funestus are large, semipermanent water bodies, which make them potential candidates for targeted larval source management. This is a technical workflow for the integration of drone surveys and mosquito larval sampling, designed for a case study aiming to characterise An. funestus breeding sites near two villages in an agricultural setting in Côte d’Ivoire. Using satellite remote sensing data, we developed an environmentally and spatially representative sampling frame and conducted paired mosquito larvae and drone mapping surveys from June to August 2021. To categorise the drone imagery, we also developed a land cover classification scheme with classes relative to An. funestus breeding ecology. We sampled 189 potential breeding habitats, of which 119 (63%) were positive for the Anopheles genus and nine (4.8%) were positive for An. funestus. We mapped 30.42 km2 of the region of interest including all water bodies which were sampled for larvae. These data can be used to inform targeted vector control efforts, although its generalisability over a large region is limited by the fine-scale nature of this study area. This paper develops protocols for integrating drone surveys and statistically rigorous entomological sampling, which can be adjusted to collect data on vector breeding habitats in other ecological contexts. Further research using data collected in this study can enable the development of deep-learning algorithms for identifying An. funestus breeding habitats across rural agricultural landscapes in Côte d’Ivoire and the analysis of risk factors for these sites. - Some of the metrics are blocked by yourconsent settings
Item type:Publication, Insights From a New 1-ha Permanent Forest Plot Reveal Differences Between Habitat Type and Similarities Between Forest Type in the Southwestern Amazon(John Wiley and Sons, 2025)The southwestern Amazon is a biodiversity hotspot home to some of the oldest permanent forest dynamics plots in the basin. Despite the region's abundance of plots, we still know relatively little about how tree diversity and composition change across the region's precipitation gradient, between habitat types, and how disturbed and managed forests compare to protected, old-growth forests since the majority of forest plots are located in protected forests. In this study, we first described a new 1-ha permanent forest dynamics plot at the confluence of agricultural land and managed Brazil nut forest. We then compared the plot to others in the region to evaluate the relationship between precipitation and plot diversity, compositional differences between floodplain and terra firme forest, and differences in forest dynamics between our disturbed forest plot and old-growth forest plots. Contrary to large-scale patterns in tree diversity, we found no relationship between precipitation and tree alpha diversity for plots in the southwestern Amazon. There were, however, clear compositional differences between floodplain and terra firme forests. Annual change in the aboveground biomass of the new plot was higher than in other plots in the region. Similarly, annual rates of mortality and recruitment were lower and higher, respectively, in the new plot compared to the other plots. The floristic and structural similarities between plots in disturbed or managed forests and plots in old-growth forests indicate a high resilience of tropical forests to low-intensity disturbances. Our findings thus provide evidence that low-intensity logging and low-impact Brazil nut harvesting in the southwest Amazon do not significantly alter forest structure and composition in the medium to long term. Our new plot bolsters the representation of disturbed and managed forests in plot databases and will be an important resource for future studies of large-scale patterns of forest diversity, structure, and dynamics.18