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Item type:Publication, The evolutionary assembly of forest communities along environmental gradients: recent diversification or sorting of pre-adapted clades?(Cold Spring Harbor Laboratory, 2020-12-22)Summary Biogeographic events occurring in the deep past can contribute to the structure of modern ecological communities. However, little is known about how the emergence of environmental gradients shape the evolution of species that underlie community assembly. In this study, we address how the creation of novel environments lead to community assembly via two non-mutually exclusive processes: 1) the immigration and ecological sorting of pre-adapted clades (ISPC), and 2) recent adaptive diversification (RAD). We study these processes in the context of the elevational gradient created by the uplift of the Central Andes. We develop a novel approach and method based on the decomposition of species turnover into within- and among-clade components, where clades correspond to lineages that originated before mountain uplift. Effects of ISPC and RAD can be inferred from how components of turnover change with elevation. We test our approach using data from over 500 Andean forest plots. We found that species turnover between communities at different elevations is dominated by the replacement of clades that originated before the uplift of the Central Andes. Our results suggest that immigration and sorting of clades pre-adapted to montane habitats is the primary mechanism shaping communities across elevations.1 - Some of the metrics are blocked by yourconsent settings
Item type:Publication, The Influence of Taxonomy and Environment on Leaf Trait Variation Along Tropical Abiotic Gradients(Frontiers Media S.A., 2020-03-03)Deconstructing functional trait variation and co-variation across a wide range of environmental conditions should increase the mechanistic understanding of community assembly processes and improve current parameterization of dynamic vegetation models. Here, we present a study that deconstructs leaf trait variation and co-variation to iithin-species, taxonomic-interspecific, and plot-environment components comparing three tropical environmental gradients in Peru, Brazil and Ghana. We measured photosynthetic, chemical and structural leaf traits using a standardized sampling protocol, totalling more than 1,000 individuals belonging to 367 species sampled. Variation associated with the whole interspecific taxonomic component (species+genus+family) for most traits was relatively consistent across environmental gradients, but intra-specificwithin-species variation and the plot-environment variation was strongly dependent on the environmental gradient. Trait-trait co-variation was also strongly linked to the environmental gradient where the traits were measured, although some traits had consistent co-variation components irrespective of environmental gradient. Our results demonstrate that filtering along gradients is mostly expressed through trait intra- and interspecifictaxonomic variation, but that trait co-variation is strongly dependent on the local environment, and thus global trait co-variation relationships might not always apply at smaller scales. - Some of the metrics are blocked by yourconsent settings
Item type:Publication, Reduced tree density and basal area in Andean forests are associated with bamboo dominance(Elsevier, 2020-10-13)Forest structure and composition play an essential role in determining the carbon storage capacity of tropical forests. Andean forests, with great potential for carbon accumulation, include large expanses of high-density woody bamboo communities. Woody bamboos can potentially alter forest structure, composition and dynamics and thus can affect carbon storage capacity; however, they are commonly excluded from forest monitoring and modelling. With the aim of documenting patterns of bamboo abundance and disentangling its association with forest structure, we carried out a bamboo census in seven 1-ha long-term forest monitoring plots situated across a large elevation gradient (1000–3600 m a.s.l.) in the Peruvian Andes. We determined that bamboo is a dominant plant group in the study area. In every plot, bamboos were the most common genera in terms of number of stems, and in two of the plots bamboo species were among those with the greatest basal area. We used a combination of Generalized linear mixed models (GLMM) and structural equation modelling (SEM) to hypothesize a causal framework and determine the direction and size of the effects of bamboo abundance (basal area) on number of individual trees, total tree basal area, mean tree basal area, mean tree growth rate and tree mortality rate. We found an overall negative association between bamboo abundance and total tree basal area driven mainly by reduced tree density (directly and indirectly mediated by an increase in tree mortality). However, the decrease in tree density and the increase in tree mortality are also associated with a small increase in tree diameter (mean tree basal area). Overall, the negative association between bamboo abundance and tree basal area suggests a lower biomass accumulation and thus a lower carbon storage capacity of trees in Andean forests where bamboo is dominant. Our results, which show the importance of bamboo in determining forest function, highlight the need for including bamboo in monitoring efforts and modeling studies. - Some of the metrics are blocked by yourconsent settings
Item type:Publication, Technical workflow development for integrating drone surveys and entomological sampling to characterise aquatic larval habitats of Anopheles funestus in agricultural landscapes in Côte d’Ivoire(Hindawi Limited, 2021-01-01)Land-use practices such as agriculture can impact mosquito vector breeding ecology, resulting in changes in disease transmission. The typical breeding habitats of Africa’s second most important malaria vector Anopheles funestus are large, semipermanent water bodies, which make them potential candidates for targeted larval source management. This is a technical workflow for the integration of drone surveys and mosquito larval sampling, designed for a case study aiming to characterise An. funestus breeding sites near two villages in an agricultural setting in Côte d’Ivoire. Using satellite remote sensing data, we developed an environmentally and spatially representative sampling frame and conducted paired mosquito larvae and drone mapping surveys from June to August 2021. To categorise the drone imagery, we also developed a land cover classification scheme with classes relative to An. funestus breeding ecology. We sampled 189 potential breeding habitats, of which 119 (63%) were positive for the Anopheles genus and nine (4.8%) were positive for An. funestus. We mapped 30.42 km2 of the region of interest including all water bodies which were sampled for larvae. These data can be used to inform targeted vector control efforts, although its generalisability over a large region is limited by the fine-scale nature of this study area. This paper develops protocols for integrating drone surveys and statistically rigorous entomological sampling, which can be adjusted to collect data on vector breeding habitats in other ecological contexts. Further research using data collected in this study can enable the development of deep-learning algorithms for identifying An. funestus breeding habitats across rural agricultural landscapes in Côte d’Ivoire and the analysis of risk factors for these sites. - Some of the metrics are blocked by yourconsent settings
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Item type:Publication, From the Andes to the desert: 16S rRNA metabarcoding characterization of aquatic bacterial communities in the Rimac River, the main source of water for Lima, Peru(Public Library of Science, 2021-04-01)The Rimac river is the main source of water for Lima, Peru's capital megacity. The river is constantly affected by different types of contamination including mine tailings in the Andes and urban sewage in the metropolitan area. In this work, we aim to produce the first characterization of aquatic bacterial communities in the Rimac river using a 16S rRNA metabarcoding approach which would be useful to identify bacterial diversity and potential understudied pathogens. We report a lower diversity in bacterial communities from the Lower Rimac (Metropolitan zone) in comparison to other sub-basins. Samples were generally grouped according to their geographical location. Bacterial classes Alphaproteobacteria, Bacteroidia, Campylobacteria, Fusobacteriia, and Gammaproteobacteria were the most frequent along the river. Arcobacter cryaerophilus (Campylobacteria) was the most frequent species in the Lower Rimac while Flavobacterium succinicans (Bacteroidia) and Hypnocyclicus (Fusobacteriia) were the most predominant in the Upper Rimac. Predicted metabolic functions in the microbiota include bacterial motility and quorum sensing. Additional metabolomic analyses showed the presence of some insecticides and herbicides in the Parac-Upper Rimac and Santa Eulalia-Parac sub-basins. The dominance in the Metropolitan area of Arcobacter cryaerophilus, an emergent pathogen associated with fecal contamination and antibiotic multiresistance, that is not usually reported in traditional microbiological quality assessments, highlights the necessity to apply next-generation sequencing tools to improve pathogen surveillance. We believe that our study will encourage the integration of omics sciences in Peru and its application on current environmental and public health issues. - Some of the metrics are blocked by yourconsent settings
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Item type:Publication, Functional susceptibility of tropical forests to climate change(Nature Research, 2022-07-01)Tropical forests are some of the most biodiverse ecosystems in the world, yet their functioning is threatened by anthropogenic disturbances and climate change. Global actions to conserve tropical forests could be enhanced by having local knowledge on the forestsʼ functional diversity and functional redundancy as proxies for their capacity to respond to global environmental change. Here we create estimates of plant functional diversity and redundancy across the tropics by combining a dataset of 16 morphological, chemical and photosynthetic plant traits sampled from 2,461 individual trees from 74 sites distributed across four continents together with local climate data for the past half century. Our findings suggest a strong link between climate and functional diversity and redundancy with the three trait groups responding similarly across the tropics and climate gradient. We show that drier tropical forests are overall less functionally diverse than wetter forests and that functional redundancy declines with increasing soil water and vapour pressure deficits. Areas with high functional diversity and high functional redundancy tend to better maintain ecosystem functioning, such as aboveground biomass, after extreme weather events. Our predictions suggest that the lower functional diversity and lower functional redundancy of drier tropical forests, in comparison with wetter forests, may leave them more at risk of shifting towards alternative states in face of further declines in water availability across tropical regions. - Some of the metrics are blocked by yourconsent settings
Item type:Publication, Improving landscape-scale productivity estimates by integrating trait-based models and remotely-sensed foliar-trait and canopy-structural data(John Wiley and Sons Inc, 2022-08-01)Assessing the impacts of anthropogenic degradation and climate change on global carbon cycling is hindered by a lack of clear, flexible and easy-to-use productivity models along with scarce trait and productivity data for parameterizing and testing those models. We provide a simple solution: a mechanistic framework (RS-CFM) that combines remotely-sensed foliar-trait and canopy-structural data with trait-based metabolic theory to efficiently map productivity at large spatial scales. We test this framework by quantifying net primary productivity (NPP) at high-resolution (0.01-ha) in hyper-diverse Peruvian tropical forests (30040 hectares) along a 3322-m elevation gradient. Our analysis captures hotspots and elevational shifts in productivity more accurately and in greater detail than alternative empirical- and process-based models that use plant functional types. This result exposes how high-resolution, location-specific variation in traits and light competition drive variability in productivity, opening up possibilities to fully harness remote sensing data and reliably scale up from traits to map global productivity in a more direct, efficient and cost-effective manner. - Some of the metrics are blocked by yourconsent settings
Item type:Publication, Critical thermal maxima differ between groups of insect pollinators and their foraging times: Implications for their responses to climate change(University of Kansas, 2024-10-11)Insects perform essential roles within ecosystems and can be vulnerable to climate change because of their small body size and limited capacity to regulate body temperature. Several groups of insects, such as bees and flies, are important pollinators of wild and cultivated plants. However, aspects of their thermal biology remain poorly studied, which limits predictions of their responses to climate change. We assessed the critical thermal maximum (CTMax) of bees and flies visiting flowers in urban and periurban areas in tropical and subtropical regions of the Americas. We also assessed the effect of the foraging time of the day on CTMax. Overall, we found that bees displayed higher CTMax than flies. Flies foraging in the morning and afternoon displayed similar CTMax while bees in the morning displayed a higher CTMax than in the afternoon. The results of this study suggest differences in the vulnerability to climate change between these two major groups of pollinators, with flies being more at risk.
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